J7_5AFI_002
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5AFI|1|A|A|945||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AFI|1|A|C|817||||P_1
5AFI|1|A|G|818||||P_1
5AFI|1|A|A|819||||P_1
5AFI|1|A|A|820||||P_1
5AFI|1|A|A|821||||P_1
5AFI|1|A|G|822||||P_1
*
5AFI|1|A|C|835||||P_1
5AFI|1|A|G|836||||P_1
5AFI|1|A|C|837||||P_1
*
5AFI|1|A|G|942||||P_1
5AFI|1|A|A|943||||P_1
5AFI|1|A|C|944||||P_1
5AFI|1|A|A|945||||P_1
5AFI|1|A|C|946||||P_1
*
5AFI|1|A|G|971||||P_1
5AFI|1|A|A|972||||P_1
5AFI|1|A|A|973||||P_1
5AFI|1|A|G|974||||P_1
5AFI|1|A|A|975||||P_1
5AFI|1|A|G|976||||P_1
*
5AFI|1|A|C|987||||P_1
5AFI|1|A|A|988||||P_1
5AFI|1|A|G|989||||P_1
5AFI|1|A|A|990||||P_1
5AFI|1|A|C|991||||P_1
*
5AFI|1|A|G|1163||||P_1
5AFI|1|A|C|1164||||P_1
*
5AFI|1|A|G|1185||||P_1
5AFI|1|A|G|1186||||P_1
5AFI|1|A|G|1187||||P_1
5AFI|1|A|U|1188||||P_1
5AFI|1|A|A|1189||||P_1
5AFI|1|A|G|1190||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
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