J7_5APO_001
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5APO|1|5|G|1116||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|C|949||||P_1
5APO|1|5|G|950||||P_1
5APO|1|5|A|951||||P_1
5APO|1|5|A|952||||P_1
5APO|1|5|G|953||||P_1
5APO|1|5|U|954||||P_1
*
5APO|1|5|A|967||||P_1
5APO|1|5|G|968||||P_1
*
5APO|1|5|U|1114||||P_1
5APO|1|5|G|1115||||P_1
5APO|1|5|G|1116||||P_1
5APO|1|5|G|1117||||P_1
*
5APO|1|5|C|1141||||P_1
5APO|1|5|G|1142||||P_1
5APO|1|5|A|1143||||P_1
5APO|1|5|U|1144||||P_1
5APO|1|5|G|1145||||P_1
5APO|1|5|C|1146||||P_1
*
5APO|1|5|G|1157||||P_1
5APO|1|5|A|1158||||P_1
5APO|1|5|A|1159||||P_1
5APO|1|5|C|1160||||P_1
5APO|1|5|G|1161||||P_1
*
5APO|1|5|C|1338||||P_1
5APO|1|5|C|1339||||P_1
*
5APO|1|5|G|1365||||P_1
5APO|1|5|A|1366||||P_1
5APO|1|5|G|1367||||P_1
5APO|1|5|U|1368||||P_1
5APO|1|5|A|1369||||P_1
5APO|1|5|G|1370||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
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