J7_5DFE_003
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 5DFE|1|YA|G|530, 5DFE|1|YA|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DFE|1|YA|A|8
5DFE|1|YA|U|9
5DFE|1|YA|G|10
5DFE|1|YA|G|11
5DFE|1|YA|U|12
5DFE|1|YA|A|13
5DFE|1|YA|A|14
5DFE|1|YA|G|15
*
5DFE|1|YA|U|525
5DFE|1|YA|A|526
5DFE|1|YA|C|527
5DFE|1|YA|A|528
5DFE|1|YA|A|529
5DFE|1|YA|G|530
5DFE|1|YA|C|531
*
5DFE|1|YA|G|2018
5DFE|1|YA|A|2019
5DFE|1|YA|A|2020
5DFE|1|YA|C|2021
5DFE|1|YA|U|2022
5DFE|1|YA|G|2023
*
5DFE|1|YA|C|2040
5DFE|1|YA|U|2041
5DFE|1|YA|A|2042
5DFE|1|YA|C|2043
*
5DFE|1|YA|G|2625
5DFE|1|YA|C|2626
5DFE|1|YA|G|2627
5DFE|1|YA|C|2628
5DFE|1|YA|A|2629
5DFE|1|YA|G|2630
*
5DFE|1|YA|C|2788
5DFE|1|YA|C|2789
*
5DFE|1|YA|G|2894
5DFE|1|YA|U|2895
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
Coloring options: