J7_5DGF_001
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5DGF|1|1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGF|1|1|C|949
5DGF|1|1|G|950
5DGF|1|1|A|951
5DGF|1|1|A|952
5DGF|1|1|G|953
5DGF|1|1|U|954
*
5DGF|1|1|A|967
5DGF|1|1|G|968
*
5DGF|1|1|U|1114
5DGF|1|1|G|1115
5DGF|1|1|G|1116
5DGF|1|1|G|1117
*
5DGF|1|1|C|1141
5DGF|1|1|G|1142
5DGF|1|1|A|1143
5DGF|1|1|U|1144
5DGF|1|1|G|1145
5DGF|1|1|C|1146
*
5DGF|1|1|G|1157
5DGF|1|1|A|1158
5DGF|1|1|A|1159
5DGF|1|1|C|1160
5DGF|1|1|G|1161
*
5DGF|1|1|C|1338
5DGF|1|1|C|1339
*
5DGF|1|1|G|1365
5DGF|1|1|A|1366
5DGF|1|1|G|1367
5DGF|1|1|U|1368
5DGF|1|1|A|1369
5DGF|1|1|G|1370
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain L7
- 60S ribosomal protein L7-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain N9
- 60S ribosomal protein L29
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
Coloring options: