J7_5DGV_002

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

5DGV|1|5|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|5|C|949
5DGV|1|5|G|950
5DGV|1|5|A|951
5DGV|1|5|A|952
5DGV|1|5|G|953
5DGV|1|5|U|954
*
5DGV|1|5|A|967
5DGV|1|5|G|968
*
5DGV|1|5|U|1114
5DGV|1|5|G|1115
5DGV|1|5|G|1116
5DGV|1|5|G|1117
*
5DGV|1|5|C|1141
5DGV|1|5|G|1142
5DGV|1|5|A|1143
5DGV|1|5|U|1144
5DGV|1|5|G|1145
5DGV|1|5|C|1146
*
5DGV|1|5|G|1157
5DGV|1|5|A|1158
5DGV|1|5|A|1159
5DGV|1|5|C|1160
5DGV|1|5|G|1161
*
5DGV|1|5|C|1338
5DGV|1|5|C|1339
*
5DGV|1|5|G|1365
5DGV|1|5|A|1366
5DGV|1|5|G|1367
5DGV|1|5|U|1368
5DGV|1|5|A|1369
5DGV|1|5|G|1370

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain l4

60S ribosomal protein L4-A

Chain l7

60S ribosomal protein L7-A

Chain m3

60S ribosomal protein L13-A

Chain m8

60S ribosomal protein L18-A

Chain n1

60S ribosomal protein L21-A

Chain n8

60S ribosomal protein L28

Chain n9

60S ribosomal protein L29

Chain o2

60S ribosomal protein L32

Chain o3

60S ribosomal protein L33-A