Loop J7_5DOY

3D structure

PDB id: 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 5DOY|1|1A|G|530, 5DOY|1|1A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5DOY|1|1A|A|8
5DOY|1|1A|U|9
5DOY|1|1A|G|10
5DOY|1|1A|G|11
5DOY|1|1A|U|12
5DOY|1|1A|A|13
5DOY|1|1A|A|14
5DOY|1|1A|G|15
*
5DOY|1|1A|U|525
5DOY|1|1A|A|526
5DOY|1|1A|C|527
5DOY|1|1A|A|528
5DOY|1|1A|A|529
5DOY|1|1A|G|530
5DOY|1|1A|C|531
*
5DOY|1|1A|G|2018
5DOY|1|1A|A|2019
5DOY|1|1A|A|2020
5DOY|1|1A|C|2021
5DOY|1|1A|U|2022
5DOY|1|1A|G|2023
*
5DOY|1|1A|C|2040
5DOY|1|1A|U|2041
5DOY|1|1A|A|2042
5DOY|1|1A|C|2043
*
5DOY|1|1A|G|2625
5DOY|1|1A|C|2626
5DOY|1|1A|G|2627
5DOY|1|1A|C|2628
5DOY|1|1A|A|2629
5DOY|1|1A|G|2630
*
5DOY|1|1A|C|2788
5DOY|1|1A|C|2789
*
5DOY|1|1A|G|2894
5DOY|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S Ribosomal Protein L32
Chain 1E: 50S Ribosomal Protein L3
Chain 1N: 50S Ribosomal Protein L13
Chain 1U: 50S Ribosomal Protein L20
Chain 1W: 50S Ribosomal Protein L22

J7_5DOY_001