J7_5DOY_003

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAUG*CAG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

5DOY|1|2A|A|945, 5DOY|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOY|1|2A|C|817
5DOY|1|2A|G|818
5DOY|1|2A|A|819
5DOY|1|2A|A|820
5DOY|1|2A|A|821
5DOY|1|2A|U|822
5DOY|1|2A|G|823
*
5DOY|1|2A|C|834
5DOY|1|2A|A|835
5DOY|1|2A|G|836
*
5DOY|1|2A|U|943
5DOY|1|2A|G|944
5DOY|1|2A|A|945
5DOY|1|2A|G|946
*
5DOY|1|2A|C|971
5DOY|1|2A|G|972
5DOY|1|2A|A|973
5DOY|1|2A|G|974
5DOY|1|2A|C|975
5DOY|1|2A|G|975|||A
5DOY|1|2A|C|976
*
5DOY|1|2A|G|987
5DOY|1|2A|A|988
5DOY|1|2A|G|989
5DOY|1|2A|A|990
5DOY|1|2A|C|991
*
5DOY|1|2A|G|1163
5DOY|1|2A|G|1164
*
5DOY|1|2A|C|1185
5DOY|1|2A|G|1186
5DOY|1|2A|G|1187
5DOY|1|2A|U|1188
5DOY|1|2A|A|1189
5DOY|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S Ribosomal Protein L30

Chain 28

50S Ribosomal Protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S Ribosomal Protein L15

Chain 2U

50S Ribosomal Protein L20

Chain 2V

50S Ribosomal Protein L21