3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
5E7K|1|1H|G|530, 5E7K|1|1H|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5E7K|1|1H|A|8
5E7K|1|1H|U|9
5E7K|1|1H|G|10
5E7K|1|1H|G|11
5E7K|1|1H|U|12
5E7K|1|1H|A|13
5E7K|1|1H|A|14
5E7K|1|1H|G|15
*
5E7K|1|1H|U|525
5E7K|1|1H|A|526
5E7K|1|1H|C|527
5E7K|1|1H|A|528
5E7K|1|1H|A|529
5E7K|1|1H|G|530
5E7K|1|1H|C|531
*
5E7K|1|1H|G|2018
5E7K|1|1H|A|2019
5E7K|1|1H|A|2020
5E7K|1|1H|C|2021
5E7K|1|1H|U|2022
5E7K|1|1H|G|2023
*
5E7K|1|1H|C|2040
5E7K|1|1H|U|2041
5E7K|1|1H|A|2042
5E7K|1|1H|C|2043
*
5E7K|1|1H|G|2625
5E7K|1|1H|C|2626
5E7K|1|1H|G|2627
5E7K|1|1H|C|2628
5E7K|1|1H|A|2629
5E7K|1|1H|G|2630
*
5E7K|1|1H|C|2788
5E7K|1|1H|C|2789
*
5E7K|1|1H|G|2894
5E7K|1|1H|U|2895

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 21
50S ribosomal protein L3
Chain 58
50S ribosomal protein L13
Chain C8
50S ribosomal protein L20
Chain E8
50S ribosomal protein L22
Chain N8
50S ribosomal protein L32

Coloring options:

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