3D structure

PDB id
5E81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGU
Length
58 nucleotides
Bulged bases
5E81|1|1H|G|530, 5E81|1|1H|C|2021, 5E81|1|1H|U|2797, 5E81|1|1H|C|2798
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5E81|1|1H|A|8
5E81|1|1H|U|9
5E81|1|1H|G|10
5E81|1|1H|G|11
5E81|1|1H|U|12
5E81|1|1H|A|13
5E81|1|1H|A|14
5E81|1|1H|G|15
*
5E81|1|1H|U|525
5E81|1|1H|A|526
5E81|1|1H|C|527
5E81|1|1H|A|528
5E81|1|1H|A|529
5E81|1|1H|G|530
5E81|1|1H|C|531
*
5E81|1|1H|G|2018
5E81|1|1H|A|2019
5E81|1|1H|A|2020
5E81|1|1H|C|2021
5E81|1|1H|U|2022
5E81|1|1H|G|2023
*
5E81|1|1H|C|2040
5E81|1|1H|U|2041
5E81|1|1H|A|2042
5E81|1|1H|C|2043
*
5E81|1|1H|G|2625
5E81|1|1H|C|2626
5E81|1|1H|G|2627
5E81|1|1H|C|2628
5E81|1|1H|A|2629
5E81|1|1H|G|2630
*
5E81|1|1H|C|2788
5E81|1|1H|C|2789
5E81|1|1H|A|2790
5E81|1|1H|C|2791
5E81|1|1H|G|2792
5E81|1|1H|G|2793
5E81|1|1H|C|2794
5E81|1|1H|G|2795
5E81|1|1H|U|2797
5E81|1|1H|C|2798
5E81|1|1H|A|2799
5E81|1|1H|A|2801
5E81|1|1H|G|2802
5E81|1|1H|C|2803
5E81|1|1H|C|2804
5E81|1|1H|G|2805
5E81|1|1H|G|2807
5E81|1|1H|U|2808
5E81|1|1H|A|2809
5E81|1|1H|A|2810
5E81|1|1H|G|2811
*
5E81|1|1H|C|2889
5E81|1|1H|G|2891
5E81|1|1H|A|2892
5E81|1|1H|G|2893
5E81|1|1H|G|2894
5E81|1|1H|U|2895

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L3
Chain 58
50S ribosomal protein L13
Chain C8
50S ribosomal protein L20
Chain E8
50S ribosomal protein L22
Chain N8
50S ribosomal protein L32

Coloring options:

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