J7_5EL4_002

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGU

Length

58 nucleotides

Bulged bases

5EL4|1|1H|G|530, 5EL4|1|1H|C|2021, 5EL4|1|1H|C|2794, 5EL4|1|1H|G|2795, 5EL4|1|1H|U|2797, 5EL4|1|1H|C|2798, 5EL4|1|1H|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL4|1|1H|A|8
5EL4|1|1H|U|9
5EL4|1|1H|G|10
5EL4|1|1H|G|11
5EL4|1|1H|U|12
5EL4|1|1H|A|13
5EL4|1|1H|A|14
5EL4|1|1H|G|15
*
5EL4|1|1H|U|525
5EL4|1|1H|A|526
5EL4|1|1H|C|527
5EL4|1|1H|A|528
5EL4|1|1H|A|529
5EL4|1|1H|G|530
5EL4|1|1H|C|531
*
5EL4|1|1H|G|2018
5EL4|1|1H|A|2019
5EL4|1|1H|A|2020
5EL4|1|1H|C|2021
5EL4|1|1H|U|2022
5EL4|1|1H|G|2023
*
5EL4|1|1H|C|2040
5EL4|1|1H|U|2041
5EL4|1|1H|A|2042
5EL4|1|1H|C|2043
*
5EL4|1|1H|G|2625
5EL4|1|1H|C|2626
5EL4|1|1H|G|2627
5EL4|1|1H|C|2628
5EL4|1|1H|A|2629
5EL4|1|1H|G|2630
*
5EL4|1|1H|C|2788
5EL4|1|1H|C|2789
5EL4|1|1H|A|2790
5EL4|1|1H|C|2791
5EL4|1|1H|G|2792
5EL4|1|1H|G|2793
5EL4|1|1H|C|2794
5EL4|1|1H|G|2795
5EL4|1|1H|U|2797
5EL4|1|1H|C|2798
5EL4|1|1H|A|2799
5EL4|1|1H|A|2801
5EL4|1|1H|G|2802
5EL4|1|1H|C|2803
5EL4|1|1H|C|2804
5EL4|1|1H|G|2805
5EL4|1|1H|G|2807
5EL4|1|1H|U|2808
5EL4|1|1H|A|2809
5EL4|1|1H|A|2810
5EL4|1|1H|G|2811
*
5EL4|1|1H|C|2889
5EL4|1|1H|G|2891
5EL4|1|1H|A|2892
5EL4|1|1H|G|2893
5EL4|1|1H|G|2894
5EL4|1|1H|U|2895

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32