J7_5EL7_002

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GUC

Length

37 nucleotides

Bulged bases

5EL7|1|1H|G|530, 5EL7|1|1H|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1H|G|7
5EL7|1|1H|A|8
5EL7|1|1H|U|9
5EL7|1|1H|G|10
5EL7|1|1H|G|11
5EL7|1|1H|U|12
5EL7|1|1H|A|13
5EL7|1|1H|A|14
5EL7|1|1H|G|15
*
5EL7|1|1H|U|525
5EL7|1|1H|A|526
5EL7|1|1H|C|527
5EL7|1|1H|A|528
5EL7|1|1H|A|529
5EL7|1|1H|G|530
5EL7|1|1H|C|531
*
5EL7|1|1H|G|2018
5EL7|1|1H|A|2019
5EL7|1|1H|A|2020
5EL7|1|1H|C|2021
5EL7|1|1H|U|2022
5EL7|1|1H|G|2023
*
5EL7|1|1H|C|2040
5EL7|1|1H|U|2041
5EL7|1|1H|A|2042
5EL7|1|1H|C|2043
*
5EL7|1|1H|G|2625
5EL7|1|1H|C|2626
5EL7|1|1H|G|2627
5EL7|1|1H|C|2628
5EL7|1|1H|A|2629
5EL7|1|1H|G|2630
*
5EL7|1|1H|C|2788
5EL7|1|1H|C|2789
*
5EL7|1|1H|G|2894
5EL7|1|1H|U|2895
5EL7|1|1H|C|2896

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32