J7_5F8K_001
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 5F8K|1|1A|G|555, 5F8K|1|1A|C|2043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5F8K|1|1A|A|8
5F8K|1|1A|U|9
5F8K|1|1A|G|10
5F8K|1|1A|G|11
5F8K|1|1A|U|12
5F8K|1|1A|A|13
5F8K|1|1A|A|14
5F8K|1|1A|G|15
*
5F8K|1|1A|U|550
5F8K|1|1A|A|551
5F8K|1|1A|C|552
5F8K|1|1A|A|553
5F8K|1|1A|A|554
5F8K|1|1A|G|555
5F8K|1|1A|C|556
*
5F8K|1|1A|G|2040
5F8K|1|1A|A|2041
5F8K|1|1A|A|2042
5F8K|1|1A|C|2043
5F8K|1|1A|U|2044
5F8K|1|1A|G|2045
*
5F8K|1|1A|C|2062
5F8K|1|1A|U|2063
5F8K|1|1A|A|2064
5F8K|1|1A|C|2065
*
5F8K|1|1A|G|2637
5F8K|1|1A|C|2638
5F8K|1|1A|G|2639
5F8K|1|1A|C|2640
5F8K|1|1A|A|2641
5F8K|1|1A|G|2642
*
5F8K|1|1A|C|2801
5F8K|1|1A|C|2802
*
5F8K|1|1A|G|2903
5F8K|1|1A|U|2904
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
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