J7_5F8K_004

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5F8K|1|2A|A|945, 5F8K|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|817
5F8K|1|2A|G|818
5F8K|1|2A|A|819
5F8K|1|2A|A|820
5F8K|1|2A|A|821
5F8K|1|2A|U|822
*
5F8K|1|2A|A|835
5F8K|1|2A|G|836
*
5F8K|1|2A|U|943
5F8K|1|2A|G|944
5F8K|1|2A|A|945
5F8K|1|2A|G|946
*
5F8K|1|2A|C|971
5F8K|1|2A|G|972
5F8K|1|2A|A|973
5F8K|1|2A|G|974
5F8K|1|2A|C|975
5F8K|1|2A|G|975|||A
5F8K|1|2A|C|976
*
5F8K|1|2A|G|987
5F8K|1|2A|A|988
5F8K|1|2A|G|989
5F8K|1|2A|A|990
5F8K|1|2A|C|991
*
5F8K|1|2A|G|1163
5F8K|1|2A|G|1164
*
5F8K|1|2A|C|1185
5F8K|1|2A|G|1186
5F8K|1|2A|G|1187
5F8K|1|2A|U|1188
5F8K|1|2A|A|1189
5F8K|1|2A|G|1190

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21