J7_5FCJ_002

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

5FCJ|1|5|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCJ|1|5|C|949
5FCJ|1|5|G|950
5FCJ|1|5|A|951
5FCJ|1|5|A|952
5FCJ|1|5|G|953
5FCJ|1|5|U|954
*
5FCJ|1|5|A|967
5FCJ|1|5|G|968
*
5FCJ|1|5|U|1114
5FCJ|1|5|G|1115
5FCJ|1|5|G|1116
5FCJ|1|5|G|1117
*
5FCJ|1|5|C|1141
5FCJ|1|5|G|1142
5FCJ|1|5|A|1143
5FCJ|1|5|U|1144
5FCJ|1|5|G|1145
5FCJ|1|5|C|1146
*
5FCJ|1|5|G|1157
5FCJ|1|5|A|1158
5FCJ|1|5|A|1159
5FCJ|1|5|C|1160
5FCJ|1|5|G|1161
*
5FCJ|1|5|C|1338
5FCJ|1|5|C|1339
*
5FCJ|1|5|G|1365
5FCJ|1|5|A|1366
5FCJ|1|5|G|1367
5FCJ|1|5|U|1368
5FCJ|1|5|A|1369
5FCJ|1|5|G|1370

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain l4

60S ribosomal protein L4-A

Chain l7

60S ribosomal protein L7-A

Chain m3

60S ribosomal protein L13-A

Chain m8

60S ribosomal protein L18-A

Chain n1

60S ribosomal protein L21-A

Chain n8

60S ribosomal protein L28

Chain n9

60S ribosomal protein L29

Chain o2

60S ribosomal protein L32

Chain o3

60S ribosomal protein L33-A