J7_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5GAD|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAD|1|A|C|8
5GAD|1|A|G|9
5GAD|1|A|A|10
5GAD|1|A|C|11
5GAD|1|A|U|12
5GAD|1|A|A|13
5GAD|1|A|A|14
5GAD|1|A|G|15
*
5GAD|1|A|U|525
5GAD|1|A|A|526
5GAD|1|A|C|527
5GAD|1|A|A|528
5GAD|1|A|A|529
5GAD|1|A|G|530
5GAD|1|A|C|531
*
5GAD|1|A|G|2018
5GAD|1|A|A|2019
5GAD|1|A|A|2020
5GAD|1|A|C|2021
5GAD|1|A|U|2022
5GAD|1|A|C|2023
*
5GAD|1|A|G|2040
5GAD|1|A|U|2041
5GAD|1|A|A|2042
5GAD|1|A|C|2043
*
5GAD|1|A|G|2625
5GAD|1|A|C|2626
5GAD|1|A|G|2627
5GAD|1|A|C|2628
5GAD|1|A|U|2629
5GAD|1|A|G|2630
*
5GAD|1|A|C|2788
5GAD|1|A|C|2789
*
5GAD|1|A|G|2894
5GAD|1|A|G|2895

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32