J7_5H4P_001

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

5H4P|1|1|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|C|949
5H4P|1|1|G|950
5H4P|1|1|A|951
5H4P|1|1|A|952
5H4P|1|1|G|953
5H4P|1|1|U|954
*
5H4P|1|1|A|967
5H4P|1|1|G|968
*
5H4P|1|1|U|1114
5H4P|1|1|G|1115
5H4P|1|1|G|1116
5H4P|1|1|G|1117
*
5H4P|1|1|C|1141
5H4P|1|1|G|1142
5H4P|1|1|A|1143
5H4P|1|1|U|1144
5H4P|1|1|G|1145
5H4P|1|1|C|1146
*
5H4P|1|1|G|1157
5H4P|1|1|A|1158
5H4P|1|1|A|1159
5H4P|1|1|C|1160
5H4P|1|1|G|1161
*
5H4P|1|1|C|1338
5H4P|1|1|C|1339
*
5H4P|1|1|G|1365
5H4P|1|1|A|1366
5H4P|1|1|G|1367
5H4P|1|1|U|1368
5H4P|1|1|A|1369
5H4P|1|1|G|1370

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L28

Chain b

60S ribosomal protein L29

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A