J7_5HKV_001

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

5HKV|1|X|G|575, 5HKV|1|X|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|U|8
5HKV|1|X|U|9
5HKV|1|X|A|10
5HKV|1|X|U|11
5HKV|1|X|U|12
5HKV|1|X|A|13
5HKV|1|X|A|14
5HKV|1|X|G|15
*
5HKV|1|X|U|570
5HKV|1|X|A|571
5HKV|1|X|C|572
5HKV|1|X|A|573
5HKV|1|X|A|574
5HKV|1|X|G|575
5HKV|1|X|U|576
*
5HKV|1|X|A|2045
5HKV|1|X|U|2046
5HKV|1|X|A|2047
5HKV|1|X|G|2048
5HKV|1|X|U|2049
5HKV|1|X|A|2050
*
5HKV|1|X|U|2067
5HKV|1|X|U|2068
5HKV|1|X|A|2069
5HKV|1|X|C|2070
*
5HKV|1|X|G|2652
5HKV|1|X|C|2653
5HKV|1|X|G|2654
5HKV|1|X|U|2655
5HKV|1|X|A|2656
5HKV|1|X|G|2657
*
5HKV|1|X|C|2815
5HKV|1|X|C|2816
*
5HKV|1|X|G|2913
5HKV|1|X|A|2914

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32