J7_5HKV_002
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5HKV|1|X|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HKV|1|X|C|862
5HKV|1|X|G|863
5HKV|1|X|A|864
5HKV|1|X|A|865
5HKV|1|X|A|866
5HKV|1|X|U|867
*
5HKV|1|X|A|880
5HKV|1|X|G|881
*
5HKV|1|X|U|987
5HKV|1|X|C|988
5HKV|1|X|A|989
5HKV|1|X|G|990
*
5HKV|1|X|C|1015
5HKV|1|X|G|1016
5HKV|1|X|A|1017
5HKV|1|X|A|1018
5HKV|1|X|A|1019
5HKV|1|X|G|1020
*
5HKV|1|X|C|1031
5HKV|1|X|A|1032
5HKV|1|X|G|1033
5HKV|1|X|A|1034
5HKV|1|X|C|1035
*
5HKV|1|X|G|1207
5HKV|1|X|A|1208
*
5HKV|1|X|U|1224
5HKV|1|X|G|1225
5HKV|1|X|G|1226
5HKV|1|X|U|1227
5HKV|1|X|A|1228
5HKV|1|X|G|1229
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: