J7_5HL7_001

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

5HL7|1|X|G|575, 5HL7|1|X|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|U|8
5HL7|1|X|U|9
5HL7|1|X|A|10
5HL7|1|X|U|11
5HL7|1|X|U|12
5HL7|1|X|A|13
5HL7|1|X|A|14
5HL7|1|X|G|15
*
5HL7|1|X|U|570
5HL7|1|X|A|571
5HL7|1|X|C|572
5HL7|1|X|A|573
5HL7|1|X|A|574
5HL7|1|X|G|575
5HL7|1|X|U|576
*
5HL7|1|X|A|2045
5HL7|1|X|U|2046
5HL7|1|X|A|2047
5HL7|1|X|G|2048
5HL7|1|X|U|2049
5HL7|1|X|A|2050
*
5HL7|1|X|U|2067
5HL7|1|X|U|2068
5HL7|1|X|A|2069
5HL7|1|X|C|2070
*
5HL7|1|X|G|2652
5HL7|1|X|C|2653
5HL7|1|X|G|2654
5HL7|1|X|U|2655
5HL7|1|X|A|2656
5HL7|1|X|G|2657
*
5HL7|1|X|C|2815
5HL7|1|X|C|2816
*
5HL7|1|X|G|2913
5HL7|1|X|A|2914

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32