3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
5I4L|1|1|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5I4L|1|1|C|949
5I4L|1|1|G|950
5I4L|1|1|A|951
5I4L|1|1|A|952
5I4L|1|1|G|953
5I4L|1|1|U|954
*
5I4L|1|1|A|967
5I4L|1|1|G|968
*
5I4L|1|1|U|1114
5I4L|1|1|G|1115
5I4L|1|1|G|1116
5I4L|1|1|G|1117
*
5I4L|1|1|C|1141
5I4L|1|1|G|1142
5I4L|1|1|A|1143
5I4L|1|1|U|1144
5I4L|1|1|G|1145
5I4L|1|1|C|1146
*
5I4L|1|1|G|1157
5I4L|1|1|A|1158
5I4L|1|1|A|1159
5I4L|1|1|C|1160
5I4L|1|1|G|1161
*
5I4L|1|1|C|1338
5I4L|1|1|C|1339
*
5I4L|1|1|G|1365
5I4L|1|1|A|1366
5I4L|1|1|G|1367
5I4L|1|1|U|1368
5I4L|1|1|A|1369
5I4L|1|1|G|1370

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L4
60S ribosomal protein L4-A
Chain L7
60S ribosomal protein L7-A
Chain M3
60S ribosomal protein L13-A
Chain M8
60S ribosomal protein L18-A
Chain N1
60S ribosomal protein L21-A
Chain N8
60S ribosomal protein L28
Chain N9
60S ribosomal protein L29
Chain O2
60S ribosomal protein L32
Chain O3
60S ribosomal protein L33-A

Coloring options:

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