J7_5IBB_003
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGU
- Length
- 58 nucleotides
- Bulged bases
- 5IBB|1|1H|G|530, 5IBB|1|1H|C|2021, 5IBB|1|1H|A|2790, 5IBB|1|1H|G|2793, 5IBB|1|1H|U|2797, 5IBB|1|1H|C|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IBB|1|1H|A|8
5IBB|1|1H|U|9
5IBB|1|1H|G|10
5IBB|1|1H|G|11
5IBB|1|1H|U|12
5IBB|1|1H|A|13
5IBB|1|1H|A|14
5IBB|1|1H|G|15
*
5IBB|1|1H|U|525
5IBB|1|1H|A|526
5IBB|1|1H|C|527
5IBB|1|1H|A|528
5IBB|1|1H|A|529
5IBB|1|1H|G|530
5IBB|1|1H|C|531
*
5IBB|1|1H|G|2018
5IBB|1|1H|A|2019
5IBB|1|1H|A|2020
5IBB|1|1H|C|2021
5IBB|1|1H|U|2022
5IBB|1|1H|G|2023
*
5IBB|1|1H|C|2040
5IBB|1|1H|U|2041
5IBB|1|1H|A|2042
5IBB|1|1H|C|2043
*
5IBB|1|1H|G|2625
5IBB|1|1H|C|2626
5IBB|1|1H|G|2627
5IBB|1|1H|C|2628
5IBB|1|1H|A|2629
5IBB|1|1H|G|2630
*
5IBB|1|1H|C|2788
5IBB|1|1H|C|2789
5IBB|1|1H|A|2790
5IBB|1|1H|C|2791
5IBB|1|1H|G|2792
5IBB|1|1H|G|2793
5IBB|1|1H|C|2794
5IBB|1|1H|G|2795
5IBB|1|1H|U|2797
5IBB|1|1H|C|2798
5IBB|1|1H|A|2799
5IBB|1|1H|A|2801
5IBB|1|1H|G|2802
5IBB|1|1H|C|2803
5IBB|1|1H|C|2804
5IBB|1|1H|G|2805
5IBB|1|1H|G|2807
5IBB|1|1H|U|2808
5IBB|1|1H|A|2809
5IBB|1|1H|A|2810
5IBB|1|1H|G|2811
*
5IBB|1|1H|C|2889
5IBB|1|1H|G|2891
5IBB|1|1H|A|2892
5IBB|1|1H|G|2893
5IBB|1|1H|G|2894
5IBB|1|1H|U|2895
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L3
- Chain 58
- 50S ribosomal protein L13
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
Coloring options: