J7_5IBB_004
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5IBB|1|1H|A|945, 5IBB|1|1H|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IBB|1|1H|C|817
5IBB|1|1H|G|818
5IBB|1|1H|A|819
5IBB|1|1H|A|820
5IBB|1|1H|A|821
5IBB|1|1H|U|822
*
5IBB|1|1H|A|835
5IBB|1|1H|G|836
*
5IBB|1|1H|U|943
5IBB|1|1H|G|944
5IBB|1|1H|A|945
5IBB|1|1H|G|946
*
5IBB|1|1H|C|971
5IBB|1|1H|G|972
5IBB|1|1H|A|973
5IBB|1|1H|G|974
5IBB|1|1H|C|974|||A
5IBB|1|1H|G|975
5IBB|1|1H|C|976
*
5IBB|1|1H|G|987
5IBB|1|1H|A|988
5IBB|1|1H|G|989
5IBB|1|1H|A|990
5IBB|1|1H|C|991
*
5IBB|1|1H|G|1163
5IBB|1|1H|G|1164
*
5IBB|1|1H|C|1185
5IBB|1|1H|G|1186
5IBB|1|1H|G|1187
5IBB|1|1H|U|1188
5IBB|1|1H|A|1189
5IBB|1|1H|G|1190
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 78
- 50S ribosomal protein L15
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain L8
- 50S ribosomal protein L30
- Chain Q8
- 50S ribosomal protein L35
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