Loop J7_5J4B

3D structure

PDB id: 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 5J4B|1|1A|G|555, 5J4B|1|1A|C|2043
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5J4B|1|1A|A|8
5J4B|1|1A|U|9
5J4B|1|1A|G|10
5J4B|1|1A|G|11
5J4B|1|1A|U|12
5J4B|1|1A|A|13
5J4B|1|1A|A|14
5J4B|1|1A|G|15
*
5J4B|1|1A|U|550
5J4B|1|1A|A|551
5J4B|1|1A|C|552
5J4B|1|1A|A|553
5J4B|1|1A|A|554
5J4B|1|1A|G|555
5J4B|1|1A|C|556
*
5J4B|1|1A|G|2040
5J4B|1|1A|A|2041
5J4B|1|1A|A|2042
5J4B|1|1A|C|2043
5J4B|1|1A|U|2044
5J4B|1|1A|G|2045
*
5J4B|1|1A|C|2062
5J4B|1|1A|U|2063
5J4B|1|1A|A|2064
5J4B|1|1A|C|2065
*
5J4B|1|1A|G|2637
5J4B|1|1A|C|2638
5J4B|1|1A|G|2639
5J4B|1|1A|C|2640
5J4B|1|1A|A|2641
5J4B|1|1A|G|2642
*
5J4B|1|1A|C|2801
5J4B|1|1A|C|2802
*
5J4B|1|1A|G|2903
5J4B|1|1A|U|2904

Current chains

Chain 1A: 23S ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J7_5J4B_001