J7_5J4B_003

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5J4B|1|2A|A|945, 5J4B|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|C|817
5J4B|1|2A|G|818
5J4B|1|2A|A|819
5J4B|1|2A|A|820
5J4B|1|2A|A|821
5J4B|1|2A|U|822
*
5J4B|1|2A|A|835
5J4B|1|2A|G|836
*
5J4B|1|2A|U|943
5J4B|1|2A|G|944
5J4B|1|2A|A|945
5J4B|1|2A|G|946
*
5J4B|1|2A|C|971
5J4B|1|2A|G|972
5J4B|1|2A|A|973
5J4B|1|2A|G|974
5J4B|1|2A|C|975
5J4B|1|2A|G|975|||A
5J4B|1|2A|C|976
*
5J4B|1|2A|G|987
5J4B|1|2A|A|988
5J4B|1|2A|G|989
5J4B|1|2A|A|990
5J4B|1|2A|C|991
*
5J4B|1|2A|G|1163
5J4B|1|2A|G|1164
*
5J4B|1|2A|C|1185
5J4B|1|2A|G|1186
5J4B|1|2A|G|1187
5J4B|1|2A|U|1188
5J4B|1|2A|A|1189
5J4B|1|2A|G|1190

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21