J7_5J4C_002
3D structure
- PDB id
- 5J4C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5J4C|1|1A|A|990, 5J4C|1|1A|C|1020
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4C|1|1A|C|864
5J4C|1|1A|G|865
5J4C|1|1A|A|866
5J4C|1|1A|A|867
5J4C|1|1A|A|868
5J4C|1|1A|U|869
*
5J4C|1|1A|A|882
5J4C|1|1A|G|883
*
5J4C|1|1A|U|988
5J4C|1|1A|G|989
5J4C|1|1A|A|990
5J4C|1|1A|G|991
*
5J4C|1|1A|C|1016
5J4C|1|1A|G|1017
5J4C|1|1A|A|1018
5J4C|1|1A|G|1019
5J4C|1|1A|C|1020
5J4C|1|1A|G|1021
5J4C|1|1A|C|1022
*
5J4C|1|1A|G|1033
5J4C|1|1A|A|1034
5J4C|1|1A|G|1035
5J4C|1|1A|A|1036
5J4C|1|1A|C|1037
*
5J4C|1|1A|G|1209
5J4C|1|1A|G|1210
*
5J4C|1|1A|C|1230
5J4C|1|1A|G|1231
5J4C|1|1A|G|1232
5J4C|1|1A|U|1233
5J4C|1|1A|A|1234
5J4C|1|1A|G|1235
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 18
- 50S ribosomal protein L35
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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