J7_5J4D_001
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5J4D|1|B|A|945, 5J4D|1|B|C|974|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4D|1|B|C|817
5J4D|1|B|G|818
5J4D|1|B|A|819
5J4D|1|B|A|820
5J4D|1|B|A|821
5J4D|1|B|U|822
*
5J4D|1|B|A|835
5J4D|1|B|G|836
*
5J4D|1|B|U|943
5J4D|1|B|G|944
5J4D|1|B|A|945
5J4D|1|B|G|946
*
5J4D|1|B|C|971
5J4D|1|B|G|972
5J4D|1|B|A|973
5J4D|1|B|G|974|||A
5J4D|1|B|C|974|||B
5J4D|1|B|G|975
5J4D|1|B|C|976
*
5J4D|1|B|G|987
5J4D|1|B|A|988
5J4D|1|B|G|989
5J4D|1|B|A|990
5J4D|1|B|C|991
*
5J4D|1|B|G|1163
5J4D|1|B|G|1164
*
5J4D|1|B|C|1185
5J4D|1|B|G|1186
5J4D|1|B|G|1187
5J4D|1|B|U|1188
5J4D|1|B|A|1189
5J4D|1|B|G|1190
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L30
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain FA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
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