J7_5J8A_002
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 5J8A|1|CA|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8A|1|CA|C|817
5J8A|1|CA|G|818
5J8A|1|CA|A|819
5J8A|1|CA|A|820
5J8A|1|CA|A|821
5J8A|1|CA|G|822
*
5J8A|1|CA|C|835
5J8A|1|CA|G|836
5J8A|1|CA|C|837
5J8A|1|CA|C|838
*
5J8A|1|CA|G|940
5J8A|1|CA|A|941
5J8A|1|CA|G|942
5J8A|1|CA|A|943
5J8A|1|CA|C|944
5J8A|1|CA|A|945
5J8A|1|CA|C|946
*
5J8A|1|CA|G|971
5J8A|1|CA|A|972
5J8A|1|CA|A|973
5J8A|1|CA|G|974
5J8A|1|CA|A|975
5J8A|1|CA|G|976
*
5J8A|1|CA|C|987
5J8A|1|CA|A|988
5J8A|1|CA|G|989
5J8A|1|CA|A|990
5J8A|1|CA|C|991
*
5J8A|1|CA|G|1163
5J8A|1|CA|C|1164
*
5J8A|1|CA|G|1185
5J8A|1|CA|G|1186
5J8A|1|CA|G|1187
5J8A|1|CA|U|1188
5J8A|1|CA|A|1189
5J8A|1|CA|G|1190
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C0
- 50S ribosomal protein L30
- Chain C4
- 50S ribosomal protein L35
- Chain CB
- 5S ribosomal RNA; 5S rRNA
- Chain CM
- 50S ribosomal protein L15
- Chain CR
- 50S ribosomal protein L20
- Chain CS
- 50S ribosomal protein L21
Coloring options: