J7_5JC9_001

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5JC9|1|CA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JC9|1|CA|C|8
5JC9|1|CA|G|9
5JC9|1|CA|A|10
5JC9|1|CA|C|11
5JC9|1|CA|U|12
5JC9|1|CA|A|13
5JC9|1|CA|A|14
5JC9|1|CA|G|15
*
5JC9|1|CA|U|525
5JC9|1|CA|A|526
5JC9|1|CA|C|527
5JC9|1|CA|A|528
5JC9|1|CA|A|529
5JC9|1|CA|G|530
5JC9|1|CA|C|531
*
5JC9|1|CA|G|2018
5JC9|1|CA|A|2019
5JC9|1|CA|A|2020
5JC9|1|CA|C|2021
5JC9|1|CA|U|2022
5JC9|1|CA|C|2023
*
5JC9|1|CA|G|2040
5JC9|1|CA|U|2041
5JC9|1|CA|A|2042
5JC9|1|CA|C|2043
*
5JC9|1|CA|G|2625
5JC9|1|CA|C|2626
5JC9|1|CA|G|2627
5JC9|1|CA|C|2628
5JC9|1|CA|U|2629
5JC9|1|CA|G|2630
*
5JC9|1|CA|C|2788
5JC9|1|CA|C|2789
*
5JC9|1|CA|G|2894
5JC9|1|CA|G|2895

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L13

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22