3D structure

PDB id
5JTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
5JTE|1|BA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JTE|1|BA|C|8
5JTE|1|BA|G|9
5JTE|1|BA|A|10
5JTE|1|BA|C|11
5JTE|1|BA|U|12
5JTE|1|BA|A|13
5JTE|1|BA|A|14
5JTE|1|BA|G|15
*
5JTE|1|BA|U|525
5JTE|1|BA|A|526
5JTE|1|BA|C|527
5JTE|1|BA|A|528
5JTE|1|BA|A|529
5JTE|1|BA|G|530
5JTE|1|BA|C|531
*
5JTE|1|BA|G|2018
5JTE|1|BA|A|2019
5JTE|1|BA|A|2020
5JTE|1|BA|C|2021
5JTE|1|BA|U|2022
5JTE|1|BA|C|2023
*
5JTE|1|BA|G|2040
5JTE|1|BA|U|2041
5JTE|1|BA|A|2042
5JTE|1|BA|C|2043
*
5JTE|1|BA|G|2625
5JTE|1|BA|C|2626
5JTE|1|BA|G|2627
5JTE|1|BA|C|2628
5JTE|1|BA|U|2629
5JTE|1|BA|G|2630
*
5JTE|1|BA|C|2788
5JTE|1|BA|C|2789
*
5JTE|1|BA|G|2894
5JTE|1|BA|G|2895

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BJ
50S ribosomal protein L13
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22

Coloring options:

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