J7_5JU8_001

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5JU8|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JU8|1|BA|C|8
5JU8|1|BA|G|9
5JU8|1|BA|A|10
5JU8|1|BA|C|11
5JU8|1|BA|U|12
5JU8|1|BA|A|13
5JU8|1|BA|A|14
5JU8|1|BA|G|15
*
5JU8|1|BA|U|525
5JU8|1|BA|A|526
5JU8|1|BA|C|527
5JU8|1|BA|A|528
5JU8|1|BA|A|529
5JU8|1|BA|G|530
5JU8|1|BA|C|531
*
5JU8|1|BA|G|2018
5JU8|1|BA|A|2019
5JU8|1|BA|A|2020
5JU8|1|BA|C|2021
5JU8|1|BA|U|2022
5JU8|1|BA|C|2023
*
5JU8|1|BA|G|2040
5JU8|1|BA|U|2041
5JU8|1|BA|A|2042
5JU8|1|BA|C|2043
*
5JU8|1|BA|G|2625
5JU8|1|BA|C|2626
5JU8|1|BA|G|2627
5JU8|1|BA|C|2628
5JU8|1|BA|U|2629
5JU8|1|BA|G|2630
*
5JU8|1|BA|C|2788
5JU8|1|BA|C|2789
*
5JU8|1|BA|G|2894
5JU8|1|BA|G|2895

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22