J7_5JVH_001

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

5JVH|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JVH|1|X|A|8
5JVH|1|X|U|9
5JVH|1|X|A|10
5JVH|1|X|G|11
5JVH|1|X|U|12
5JVH|1|X|A|13
5JVH|1|X|A|14
5JVH|1|X|G|15
*
5JVH|1|X|U|535
5JVH|1|X|A|536
5JVH|1|X|C|537
5JVH|1|X|A|538
5JVH|1|X|A|539
5JVH|1|X|G|540
5JVH|1|X|C|541
*
5JVH|1|X|G|2001
5JVH|1|X|A|2002
5JVH|1|X|A|2003
5JVH|1|X|U|2004
5JVH|1|X|U|2005
5JVH|1|X|G|2006
*
5JVH|1|X|C|2023
5JVH|1|X|U|2024
5JVH|1|X|A|2025
5JVH|1|X|C|2026
*
5JVH|1|X|G|2604
5JVH|1|X|C|2605
5JVH|1|X|G|2606
5JVH|1|X|C|2607
5JVH|1|X|A|2608
5JVH|1|X|G|2609
*
5JVH|1|X|C|2768
5JVH|1|X|C|2769
*
5JVH|1|X|G|2868
5JVH|1|X|U|2869

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32