J7_5KCS_001
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 5KCS|1|1A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1A|C|8
5KCS|1|1A|G|9
5KCS|1|1A|A|10
5KCS|1|1A|C|11
5KCS|1|1A|U|12
5KCS|1|1A|A|13
5KCS|1|1A|A|14
5KCS|1|1A|G|15
*
5KCS|1|1A|U|525
5KCS|1|1A|A|526
5KCS|1|1A|C|527
5KCS|1|1A|A|528
5KCS|1|1A|A|529
5KCS|1|1A|G|530
5KCS|1|1A|C|531
*
5KCS|1|1A|G|2018
5KCS|1|1A|A|2019
5KCS|1|1A|A|2020
5KCS|1|1A|C|2021
5KCS|1|1A|U|2022
5KCS|1|1A|C|2023
*
5KCS|1|1A|G|2040
5KCS|1|1A|U|2041
5KCS|1|1A|A|2042
5KCS|1|1A|C|2043
*
5KCS|1|1A|G|2625
5KCS|1|1A|C|2626
5KCS|1|1A|G|2627
5KCS|1|1A|C|2628
5KCS|1|1A|U|2629
5KCS|1|1A|G|2630
*
5KCS|1|1A|C|2788
5KCS|1|1A|C|2789
*
5KCS|1|1A|G|2894
5KCS|1|1A|G|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
Coloring options: