J7_5KPV_001

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5KPV|1|27|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPV|1|27|C|8
5KPV|1|27|G|9
5KPV|1|27|A|10
5KPV|1|27|C|11
5KPV|1|27|U|12
5KPV|1|27|A|13
5KPV|1|27|A|14
5KPV|1|27|G|15
*
5KPV|1|27|U|525
5KPV|1|27|A|526
5KPV|1|27|C|527
5KPV|1|27|A|528
5KPV|1|27|A|529
5KPV|1|27|G|530
5KPV|1|27|C|531
*
5KPV|1|27|G|2018
5KPV|1|27|A|2019
5KPV|1|27|A|2020
5KPV|1|27|C|2021
5KPV|1|27|U|2022
5KPV|1|27|C|2023
*
5KPV|1|27|G|2040
5KPV|1|27|U|2041
5KPV|1|27|A|2042
5KPV|1|27|C|2043
*
5KPV|1|27|G|2625
5KPV|1|27|C|2626
5KPV|1|27|G|2627
5KPV|1|27|C|2628
5KPV|1|27|U|2629
5KPV|1|27|G|2630
*
5KPV|1|27|C|2788
5KPV|1|27|C|2789
*
5KPV|1|27|G|2894
5KPV|1|27|G|2895

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22