J7_5KPX_001

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5KPX|1|27|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPX|1|27|C|8
5KPX|1|27|G|9
5KPX|1|27|A|10
5KPX|1|27|C|11
5KPX|1|27|U|12
5KPX|1|27|A|13
5KPX|1|27|A|14
5KPX|1|27|G|15
*
5KPX|1|27|U|525
5KPX|1|27|A|526
5KPX|1|27|C|527
5KPX|1|27|A|528
5KPX|1|27|A|529
5KPX|1|27|G|530
5KPX|1|27|C|531
*
5KPX|1|27|G|2018
5KPX|1|27|A|2019
5KPX|1|27|A|2020
5KPX|1|27|C|2021
5KPX|1|27|U|2022
5KPX|1|27|C|2023
*
5KPX|1|27|G|2040
5KPX|1|27|U|2041
5KPX|1|27|A|2042
5KPX|1|27|C|2043
*
5KPX|1|27|G|2625
5KPX|1|27|C|2626
5KPX|1|27|G|2627
5KPX|1|27|C|2628
5KPX|1|27|U|2629
5KPX|1|27|G|2630
*
5KPX|1|27|C|2788
5KPX|1|27|C|2789
*
5KPX|1|27|G|2894
5KPX|1|27|G|2895

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22