J7_5LZC_001

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5LZC|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZC|1|A|C|8
5LZC|1|A|G|9
5LZC|1|A|A|10
5LZC|1|A|C|11
5LZC|1|A|U|12
5LZC|1|A|A|13
5LZC|1|A|A|14
5LZC|1|A|G|15
*
5LZC|1|A|U|525
5LZC|1|A|A|526
5LZC|1|A|C|527
5LZC|1|A|A|528
5LZC|1|A|A|529
5LZC|1|A|G|530
5LZC|1|A|C|531
*
5LZC|1|A|G|2018
5LZC|1|A|A|2019
5LZC|1|A|A|2020
5LZC|1|A|C|2021
5LZC|1|A|U|2022
5LZC|1|A|C|2023
*
5LZC|1|A|G|2040
5LZC|1|A|U|2041
5LZC|1|A|A|2042
5LZC|1|A|C|2043
*
5LZC|1|A|G|2625
5LZC|1|A|C|2626
5LZC|1|A|G|2627
5LZC|1|A|C|2628
5LZC|1|A|U|2629
5LZC|1|A|G|2630
*
5LZC|1|A|C|2788
5LZC|1|A|C|2789
*
5LZC|1|A|G|2894
5LZC|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22