J7_5MDY_001
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 5MDY|1|1|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MDY|1|1|C|8
5MDY|1|1|G|9
5MDY|1|1|A|10
5MDY|1|1|C|11
5MDY|1|1|U|12
5MDY|1|1|A|13
5MDY|1|1|A|14
5MDY|1|1|G|15
*
5MDY|1|1|U|525
5MDY|1|1|A|526
5MDY|1|1|C|527
5MDY|1|1|A|528
5MDY|1|1|A|529
5MDY|1|1|G|530
5MDY|1|1|C|531
*
5MDY|1|1|G|2018
5MDY|1|1|A|2019
5MDY|1|1|A|2020
5MDY|1|1|C|2021
5MDY|1|1|U|2022
5MDY|1|1|C|2023
*
5MDY|1|1|G|2040
5MDY|1|1|U|2041
5MDY|1|1|A|2042
5MDY|1|1|C|2043
*
5MDY|1|1|G|2625
5MDY|1|1|C|2626
5MDY|1|1|G|2627
5MDY|1|1|C|2628
5MDY|1|1|U|2629
5MDY|1|1|G|2630
*
5MDY|1|1|C|2788
5MDY|1|1|C|2789
*
5MDY|1|1|G|2894
5MDY|1|1|G|2895
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: