J7_5MDY_002
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 5MDY|1|1|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MDY|1|1|C|817
5MDY|1|1|G|818
5MDY|1|1|A|819
5MDY|1|1|A|820
5MDY|1|1|A|821
5MDY|1|1|G|822
*
5MDY|1|1|C|835
5MDY|1|1|G|836
5MDY|1|1|C|837
5MDY|1|1|C|838
*
5MDY|1|1|G|940
5MDY|1|1|A|941
5MDY|1|1|G|942
5MDY|1|1|A|943
5MDY|1|1|C|944
5MDY|1|1|A|945
5MDY|1|1|C|946
*
5MDY|1|1|G|971
5MDY|1|1|A|972
5MDY|1|1|A|973
5MDY|1|1|G|974
5MDY|1|1|A|975
5MDY|1|1|G|976
*
5MDY|1|1|C|987
5MDY|1|1|A|988
5MDY|1|1|G|989
5MDY|1|1|A|990
5MDY|1|1|C|991
*
5MDY|1|1|G|1163
5MDY|1|1|C|1164
*
5MDY|1|1|G|1185
5MDY|1|1|G|1186
5MDY|1|1|G|1187
5MDY|1|1|U|1188
5MDY|1|1|A|1189
5MDY|1|1|G|1190
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
- Chain e
- 50S ribosomal protein L35
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