J7_5MDZ_002
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 5MDZ|1|1|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MDZ|1|1|C|817
5MDZ|1|1|G|818
5MDZ|1|1|A|819
5MDZ|1|1|A|820
5MDZ|1|1|A|821
5MDZ|1|1|G|822
*
5MDZ|1|1|C|835
5MDZ|1|1|G|836
5MDZ|1|1|C|837
5MDZ|1|1|C|838
*
5MDZ|1|1|G|940
5MDZ|1|1|A|941
5MDZ|1|1|G|942
5MDZ|1|1|A|943
5MDZ|1|1|C|944
5MDZ|1|1|A|945
5MDZ|1|1|C|946
*
5MDZ|1|1|G|971
5MDZ|1|1|A|972
5MDZ|1|1|A|973
5MDZ|1|1|G|974
5MDZ|1|1|A|975
5MDZ|1|1|G|976
*
5MDZ|1|1|C|987
5MDZ|1|1|A|988
5MDZ|1|1|G|989
5MDZ|1|1|A|990
5MDZ|1|1|C|991
*
5MDZ|1|1|G|1163
5MDZ|1|1|C|1164
*
5MDZ|1|1|G|1185
5MDZ|1|1|G|1186
5MDZ|1|1|G|1187
5MDZ|1|1|U|1188
5MDZ|1|1|A|1189
5MDZ|1|1|G|1190
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
- Chain e
- 50S ribosomal protein L35
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