J7_5MGP_001

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5MGP|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|A|C|8
5MGP|1|A|G|9
5MGP|1|A|A|10
5MGP|1|A|C|11
5MGP|1|A|U|12
5MGP|1|A|A|13
5MGP|1|A|A|14
5MGP|1|A|G|15
*
5MGP|1|A|U|525
5MGP|1|A|A|526
5MGP|1|A|C|527
5MGP|1|A|A|528
5MGP|1|A|A|529
5MGP|1|A|G|530
5MGP|1|A|C|531
*
5MGP|1|A|G|2018
5MGP|1|A|A|2019
5MGP|1|A|A|2020
5MGP|1|A|C|2021
5MGP|1|A|U|2022
5MGP|1|A|C|2023
*
5MGP|1|A|G|2040
5MGP|1|A|U|2041
5MGP|1|A|A|2042
5MGP|1|A|C|2043
*
5MGP|1|A|G|2625
5MGP|1|A|C|2626
5MGP|1|A|G|2627
5MGP|1|A|C|2628
5MGP|1|A|U|2629
5MGP|1|A|G|2630
*
5MGP|1|A|C|2788
5MGP|1|A|C|2789
*
5MGP|1|A|G|2894
5MGP|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22