J7_5ND9_001
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
- Length
- 35 nucleotides
- Bulged bases
- 5ND9|1|A|G|575, 5ND9|1|A|G|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND9|1|A|U|8
5ND9|1|A|U|9
5ND9|1|A|A|10
5ND9|1|A|U|11
5ND9|1|A|U|12
5ND9|1|A|A|13
5ND9|1|A|A|14
5ND9|1|A|G|15
*
5ND9|1|A|U|570
5ND9|1|A|A|571
5ND9|1|A|C|572
5ND9|1|A|A|573
5ND9|1|A|A|574
5ND9|1|A|G|575
5ND9|1|A|U|576
*
5ND9|1|A|A|2045
5ND9|1|A|U|2046
5ND9|1|A|A|2047
5ND9|1|A|G|2048
5ND9|1|A|U|2049
5ND9|1|A|A|2050
*
5ND9|1|A|U|2067
5ND9|1|A|U|2068
5ND9|1|A|A|2069
5ND9|1|A|C|2070
*
5ND9|1|A|G|2652
5ND9|1|A|C|2653
5ND9|1|A|G|2654
5ND9|1|A|U|2655
5ND9|1|A|A|2656
5ND9|1|A|G|2657
*
5ND9|1|A|C|2815
5ND9|1|A|C|2816
*
5ND9|1|A|G|2913
5ND9|1|A|A|2914
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
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