J7_5ND9_002
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5ND9|1|A|C|988, 5ND9|1|A|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND9|1|A|C|862
5ND9|1|A|G|863
5ND9|1|A|A|864
5ND9|1|A|A|865
5ND9|1|A|A|866
5ND9|1|A|U|867
*
5ND9|1|A|A|880
5ND9|1|A|G|881
*
5ND9|1|A|U|987
5ND9|1|A|C|988
5ND9|1|A|A|989
5ND9|1|A|G|990
*
5ND9|1|A|C|1015
5ND9|1|A|G|1016
5ND9|1|A|A|1017
5ND9|1|A|A|1018
5ND9|1|A|A|1019
5ND9|1|A|G|1020
*
5ND9|1|A|C|1031
5ND9|1|A|A|1032
5ND9|1|A|G|1033
5ND9|1|A|A|1034
5ND9|1|A|C|1035
*
5ND9|1|A|G|1207
5ND9|1|A|A|1208
*
5ND9|1|A|U|1224
5ND9|1|A|G|1225
5ND9|1|A|G|1226
5ND9|1|A|U|1227
5ND9|1|A|A|1228
5ND9|1|A|G|1229
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 7
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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