J7_5NDV_002
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5NDV|1|5|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDV|1|5|C|949
5NDV|1|5|G|950
5NDV|1|5|A|951
5NDV|1|5|A|952
5NDV|1|5|G|953
5NDV|1|5|U|954
*
5NDV|1|5|A|967
5NDV|1|5|G|968
*
5NDV|1|5|U|1114
5NDV|1|5|G|1115
5NDV|1|5|G|1116
5NDV|1|5|G|1117
*
5NDV|1|5|C|1141
5NDV|1|5|G|1142
5NDV|1|5|A|1143
5NDV|1|5|U|1144
5NDV|1|5|G|1145
5NDV|1|5|C|1146
*
5NDV|1|5|G|1157
5NDV|1|5|A|1158
5NDV|1|5|A|1159
5NDV|1|5|C|1160
5NDV|1|5|G|1161
*
5NDV|1|5|C|1338
5NDV|1|5|C|1339
*
5NDV|1|5|G|1365
5NDV|1|5|A|1366
5NDV|1|5|G|1367
5NDV|1|5|U|1368
5NDV|1|5|A|1369
5NDV|1|5|G|1370
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l4
- 60S ribosomal protein L4-A
- Chain l7
- 60S ribosomal protein L7-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain n1
- 60S ribosomal protein L21-A
- Chain n8
- 60S ribosomal protein L28
- Chain n9
- 60S ribosomal protein L29
- Chain o2
- 60S ribosomal protein L32
- Chain o3
- 60S ribosomal protein L33-A
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