J7_5NG8_001
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GAU*AUGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5NG8|1|AA|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NG8|1|AA|C|862
5NG8|1|AA|G|863
5NG8|1|AA|A|864
5NG8|1|AA|A|865
5NG8|1|AA|A|866
5NG8|1|AA|U|867
*
5NG8|1|AA|A|880
5NG8|1|AA|G|881
*
5NG8|1|AA|U|987
5NG8|1|AA|C|988
5NG8|1|AA|A|989
5NG8|1|AA|G|990
*
5NG8|1|AA|C|1015
5NG8|1|AA|G|1016
5NG8|1|AA|A|1017
5NG8|1|AA|A|1018
5NG8|1|AA|A|1019
5NG8|1|AA|G|1020
*
5NG8|1|AA|C|1031
5NG8|1|AA|A|1032
5NG8|1|AA|G|1033
5NG8|1|AA|A|1034
5NG8|1|AA|C|1035
*
5NG8|1|AA|G|1207
5NG8|1|AA|A|1208
5NG8|1|AA|U|1209
*
5NG8|1|AA|A|1223
5NG8|1|AA|U|1224
5NG8|1|AA|G|1225
5NG8|1|AA|G|1226
5NG8|1|AA|U|1227
5NG8|1|AA|A|1228
5NG8|1|AA|G|1229
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L35
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AJ
- 50S ribosomal protein L15
- Chain AO
- 50S ribosomal protein L20
- Chain AP
- 50S ribosomal protein L21
- Chain AX
- 50S ribosomal protein L30
Coloring options: