J7_5NWY_001

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5NWY|1|N|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NWY|1|N|C|8
5NWY|1|N|G|9
5NWY|1|N|A|10
5NWY|1|N|C|11
5NWY|1|N|U|12
5NWY|1|N|A|13
5NWY|1|N|A|14
5NWY|1|N|G|15
*
5NWY|1|N|U|525
5NWY|1|N|A|526
5NWY|1|N|C|527
5NWY|1|N|A|528
5NWY|1|N|A|529
5NWY|1|N|G|530
5NWY|1|N|C|531
*
5NWY|1|N|G|2018
5NWY|1|N|A|2019
5NWY|1|N|A|2020
5NWY|1|N|C|2021
5NWY|1|N|U|2022
5NWY|1|N|C|2023
*
5NWY|1|N|G|2040
5NWY|1|N|U|2041
5NWY|1|N|A|2042
5NWY|1|N|C|2043
*
5NWY|1|N|G|2625
5NWY|1|N|C|2626
5NWY|1|N|G|2627
5NWY|1|N|C|2628
5NWY|1|N|U|2629
5NWY|1|N|G|2630
*
5NWY|1|N|C|2788
5NWY|1|N|C|2789
*
5NWY|1|N|G|2894
5NWY|1|N|G|2895

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain W

50S ribosomal protein L13

Chain d

50S ribosomal protein L20

Chain f

50S ribosomal protein L22

Chain n

50S ribosomal protein L32