J7_5O2R_001

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5O2R|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|C|8
5O2R|1|A|G|9
5O2R|1|A|A|10
5O2R|1|A|C|11
5O2R|1|A|U|12
5O2R|1|A|A|13
5O2R|1|A|A|14
5O2R|1|A|G|15
*
5O2R|1|A|U|525
5O2R|1|A|A|526
5O2R|1|A|C|527
5O2R|1|A|A|528
5O2R|1|A|A|529
5O2R|1|A|G|530
5O2R|1|A|C|531
*
5O2R|1|A|G|2018
5O2R|1|A|A|2019
5O2R|1|A|A|2020
5O2R|1|A|C|2021
5O2R|1|A|U|2022
5O2R|1|A|C|2023
*
5O2R|1|A|G|2040
5O2R|1|A|U|2041
5O2R|1|A|A|2042
5O2R|1|A|C|2043
*
5O2R|1|A|G|2625
5O2R|1|A|C|2626
5O2R|1|A|G|2627
5O2R|1|A|C|2628
5O2R|1|A|U|2629
5O2R|1|A|G|2630
*
5O2R|1|A|C|2788
5O2R|1|A|C|2789
*
5O2R|1|A|G|2894
5O2R|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22