J7_5O2R_002
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 5O2R|1|A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5O2R|1|A|C|817
5O2R|1|A|G|818
5O2R|1|A|A|819
5O2R|1|A|A|820
5O2R|1|A|A|821
5O2R|1|A|G|822
*
5O2R|1|A|C|835
5O2R|1|A|G|836
5O2R|1|A|C|837
5O2R|1|A|C|838
*
5O2R|1|A|G|940
5O2R|1|A|A|941
5O2R|1|A|G|942
5O2R|1|A|A|943
5O2R|1|A|C|944
5O2R|1|A|A|945
5O2R|1|A|C|946
*
5O2R|1|A|G|971
5O2R|1|A|A|972
5O2R|1|A|A|973
5O2R|1|A|G|974
5O2R|1|A|A|975
5O2R|1|A|G|976
*
5O2R|1|A|C|987
5O2R|1|A|A|988
5O2R|1|A|G|989
5O2R|1|A|A|990
5O2R|1|A|C|991
*
5O2R|1|A|G|1163
5O2R|1|A|C|1164
*
5O2R|1|A|G|1185
5O2R|1|A|G|1186
5O2R|1|A|G|1187
5O2R|1|A|U|1188
5O2R|1|A|A|1189
5O2R|1|A|G|1190
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
Coloring options: