J7_5ON6_002

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

5ON6|1|AR|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|AR|C|949
5ON6|1|AR|G|950
5ON6|1|AR|A|951
5ON6|1|AR|A|952
5ON6|1|AR|G|953
5ON6|1|AR|U|954
*
5ON6|1|AR|A|967
5ON6|1|AR|G|968
*
5ON6|1|AR|U|1114
5ON6|1|AR|G|1115
5ON6|1|AR|G|1116
5ON6|1|AR|G|1117
*
5ON6|1|AR|C|1141
5ON6|1|AR|G|1142
5ON6|1|AR|A|1143
5ON6|1|AR|U|1144
5ON6|1|AR|G|1145
5ON6|1|AR|C|1146
*
5ON6|1|AR|G|1157
5ON6|1|AR|A|1158
5ON6|1|AR|A|1159
5ON6|1|AR|C|1160
5ON6|1|AR|G|1161
*
5ON6|1|AR|C|1338
5ON6|1|AR|C|1339
*
5ON6|1|AR|G|1365
5ON6|1|AR|A|1366
5ON6|1|AR|G|1367
5ON6|1|AR|U|1368
5ON6|1|AR|A|1369
5ON6|1|AR|G|1370

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CI

60S ribosomal protein L7-A

Chain CN

60S ribosomal protein L13-A

Chain CS

60S ribosomal protein L18-A

Chain CV

60S ribosomal protein L21-A

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DG

60S ribosomal protein L32

Chain DH

60S ribosomal protein L33-A