Loop J7_5OPT

3D structure

PDB id: 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of KSRP in context of Trypanosoma cruzi 40S
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å

Loop

Sequence: AUUGAG*CG*CAAAAAAC*GAUUUUU*ACAAAGGAGCAGC*GAGAUUAUG*CAGGAAU
Length: 52 nucleotides
Bulged bases: 5OPT|1|E|A|786, 5OPT|1|E|U|846, 5OPT|1|E|U|847, 5OPT|1|E|G|919, 5OPT|1|E|G|921, 5OPT|1|E|G|924, 5OPT|1|E|A|974, 5OPT|1|E|U|976, 5OPT|1|E|U|978
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5OPT|1|E|A|690
5OPT|1|E|U|691
5OPT|1|E|U|692
5OPT|1|E|G|693
5OPT|1|E|A|694
5OPT|1|E|G|695
*
5OPT|1|E|C|760
5OPT|1|E|G|761
*
5OPT|1|E|C|780
5OPT|1|E|A|781
5OPT|1|E|A|782
5OPT|1|E|A|783
5OPT|1|E|A|784
5OPT|1|E|A|785
5OPT|1|E|A|786
5OPT|1|E|C|787
*
5OPT|1|E|G|844
5OPT|1|E|A|845
5OPT|1|E|U|846
5OPT|1|E|U|847
5OPT|1|E|U|848
5OPT|1|E|U|849
5OPT|1|E|U|850
*
5OPT|1|E|A|913
5OPT|1|E|C|914
5OPT|1|E|A|915
5OPT|1|E|A|916
5OPT|1|E|A|917
5OPT|1|E|G|918
5OPT|1|E|G|919
5OPT|1|E|A|920
5OPT|1|E|G|921
5OPT|1|E|C|922
5OPT|1|E|A|923
5OPT|1|E|G|924
5OPT|1|E|C|925
*
5OPT|1|E|G|971
5OPT|1|E|A|972
5OPT|1|E|G|973
5OPT|1|E|A|974
5OPT|1|E|U|975
5OPT|1|E|U|976
5OPT|1|E|A|977
5OPT|1|E|U|978
5OPT|1|E|G|979
*
5OPT|1|E|C|1188
5OPT|1|E|A|1189
5OPT|1|E|G|1190
5OPT|1|E|G|1191
5OPT|1|E|A|1192
5OPT|1|E|A|1193
5OPT|1|E|U|1194

Current chains

Chain E: 18S rRNA

Nearby chains

Chain M: 40S ribosomal protein S23, putative
Chain Q: Ribosomal protein S7, putative
Chain R: 40S ribosomal protein S13, putative
Chain X: 40S ribosomal protein S11, putative
Chain e: 40S ribosomal protein S15a, putative

J7_5OPT_002