3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
5UYK|1|01|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5UYK|1|01|C|817
5UYK|1|01|G|818
5UYK|1|01|A|819
5UYK|1|01|A|820
5UYK|1|01|A|821
5UYK|1|01|G|822
*
5UYK|1|01|C|835
5UYK|1|01|G|836
5UYK|1|01|C|837
*
5UYK|1|01|G|942
5UYK|1|01|A|943
5UYK|1|01|C|944
5UYK|1|01|A|945
5UYK|1|01|C|946
*
5UYK|1|01|G|971
5UYK|1|01|A|972
5UYK|1|01|A|973
5UYK|1|01|G|974
5UYK|1|01|A|975
5UYK|1|01|G|976
*
5UYK|1|01|C|987
5UYK|1|01|A|988
5UYK|1|01|G|989
5UYK|1|01|A|990
5UYK|1|01|C|991
*
5UYK|1|01|G|1163
5UYK|1|01|C|1164
*
5UYK|1|01|G|1185
5UYK|1|01|G|1186
5UYK|1|01|G|1187
5UYK|1|01|U|1188
5UYK|1|01|A|1189
5UYK|1|01|G|1190

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 02
5S ribosomal RNA; 5S rRNA
Chain 14
50S ribosomal protein L15
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 28
50S ribosomal protein L30
Chain 33
50S ribosomal protein L35

Coloring options:

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