J7_5UYP_002
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAAGC*GCGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 38 nucleotides
- Bulged bases
- 5UYP|1|01|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5UYP|1|01|C|817
5UYP|1|01|G|818
5UYP|1|01|A|819
5UYP|1|01|A|820
5UYP|1|01|A|821
5UYP|1|01|G|822
5UYP|1|01|C|823
*
5UYP|1|01|G|834
5UYP|1|01|C|835
5UYP|1|01|G|836
5UYP|1|01|C|837
5UYP|1|01|C|838
*
5UYP|1|01|G|940
5UYP|1|01|A|941
5UYP|1|01|G|942
5UYP|1|01|A|943
5UYP|1|01|C|944
5UYP|1|01|A|945
5UYP|1|01|C|946
*
5UYP|1|01|G|971
5UYP|1|01|A|972
5UYP|1|01|A|973
5UYP|1|01|G|974
5UYP|1|01|A|975
5UYP|1|01|G|976
*
5UYP|1|01|C|987
5UYP|1|01|A|988
5UYP|1|01|G|989
5UYP|1|01|A|990
5UYP|1|01|C|991
*
5UYP|1|01|G|1163
5UYP|1|01|C|1164
*
5UYP|1|01|G|1185
5UYP|1|01|G|1186
5UYP|1|01|G|1187
5UYP|1|01|U|1188
5UYP|1|01|A|1189
5UYP|1|01|G|1190
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 02
- 5S ribosomal RNA; 5S rRNA
- Chain 14
- 50S ribosomal protein L15
- Chain 19
- 50S ribosomal protein L20
- Chain 20
- 50S ribosomal protein L21
- Chain 25
- 50S ribosomal protein L27
- Chain 28
- 50S ribosomal protein L30
- Chain 33
- 50S ribosomal protein L35
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